Publications
2024
Authors: Zhang J, Ataei L, Mittal K, Wu L, Caldwell L, Huynh L, Sarajideen S, Tse K, Simon MM, Mazid A, Cook DP, Trcka D, Kwan T, Hoffman MM, Wrana JL, Esteban MA, Ramalho-Santos M.
Reference: Developmental Cell, 2024. https://doi.org/10.1016/j.devcel.2024.09.024
Authors: Kim YK, Collignon E, Martin SB, Ramalho-Santos M.
Reference: Trends in Genetics, 2024, 10.1016/j.tig.2024.08.005
2023
Authors: Collignon E, Cho B, Furlan G, Fothergill-Robinson J, Martin SB, McClymont SA, Ross RL, Limbach PA, Ramalho-Santos M.
Reference: Nature Cell Biology, 2023, https://doi.org/10.1038/s41556-023-01212-x
Authors: Kim YK, Cho B, Cook DP, Trcka D, Wrana JL, Ramalho-Santos M.
Reference: Cell Reports, 2023, https://www.cell.com/cell-reports/fulltext/S2211-1247(22)01882-4
2022
Authors: Macrae TA, Fothergill-Robinson J, Ramalho-Santos M.
Reference: Nat Rev Mol Cell Bio, https://doi.org/10.1038/s41580-022-00518-2
2021
Authors: Percharde M, Lin CJ, Ramalho-Santos M.
Reference: STAR Protocols, Volume 2, Issue 3, 2021, 100726, ISSN 2666-1667.
Authors: Bulut-Karslioglu A, Jin H, Kim YK, Cho B, Guzman-Ayala M, JK Williamson A, Hejna M, Stötzel M, Whetton AD, S. Song J, Ramalho-Santos M
Reference: Nature Communications, 2021 Aug 11;12(1):4859.
Authors: Macrae TA, Ramalho-Santos M.
Reference: Nature Communications. 2021 Mar 25;12(1):1865.
PMID: 33767158
Authors: Lu JY, Chang L, Li T, Wang T, Yin Y, Zhan G, Han X, Zhang K, Tao Y, Percharde M, Wang L, Peng Q, Yan P, Zhang H, Bi X, Shao W, Hong Y, Wu Z, Ma R, Wang P, Li W, Zhang J, Chang Z, Hou Y, Zhu B, Santos MR, Li P, Xie W, Na J, Sun Y, Shen X.
Reference : Cell Research. 2021 Jan 29, 10.1038/s41422-020-00466-6
PMID: 33514913
Authors: Rehman AK, Haynes J, Collignon E, Brown KR, Wang Y, Nixon AML, Bruce JP, Wintersinger JA, Mer AS, Lo EBL, Leung C, Lima-Fernandes E, Pedley NM, Soares F, McGibbon S, He HH, Pollet A, Pugh TJ, Haibe-Kains B, Morris Q, Ramalho-Santos M, Goyal S, Moffat J, O'Brien CA
Reference :Cell. 2021 Jan 7; 184(1):226-242.
PMID: 33417860
2020
Authors: Ruggeri E, Lira-Albarrán S, Grow EJ, Liu X, Harner R, Maltepe E, Ramalho-Santos M, Donjacour A, Rinaudo P.
Reference: Mol Hum Reprod. 2020 Nov 1;26(11):866-878. doi: 10.1093/molehr/gaaa064.
PMID: 33010164
Authors: Lu JY, Shao W, Chang L, Yin Y, Li T, Zhang H, Hong Y, Percharde M, Guo L, Wu Z, Liu L, Liu W, Yan P, Ramalho-Santos M, Sun Y, Shen X.
Reference: Cell Rep. 2020 Mar 10; 30 (10) :3296-3311
PMID: 32160538
Authors: Percharde M, Sultana T, Ramalho-Santos M.
Reference: Bioessays. 2020 Feb 13. https://onlinelibrary.wiley.com/doi/full/10.1002/bies.201900232
PMID: 32053231
2019
Authors: DiTroia SP, Percharde M, Guerquin MJ, Wall E, Collignon E, Ebata KT, Mesh K, Mahesula S, Agathocleous M, Laird DJ, Livera G, Ramalho-Santos M.
Reference: Nature. 2019 Sep 04. https://doi.org/10.1038/s41586-019-1536-1
PMID: 31719689
2018
Authors: Percharde M, Lin CJ, Yin Y, Guan J, Peixoto GA, Bulut-Karslioglu A, Biechele S, Huang B, Shen X, Ramalho-Santos M.
Reference: Cell. 2018 Jun 19. pii: S0092-8674(18)30655-X. doi: 10.1016/j.cell.2018.05.043.
PMID: 29937225
Authors: Bulut-Karslioglu A, Macrae TA, Oses-Prieto JA, Covarrubias S, Percharde M, Ku G, Diaz A, McManus MT, Burlingame AL, Ramalho-Santos M.
Reference: Cell Stem Cell. 2018 Mar 1;22(3):369-383.e8. doi: 10.1016/j.stem.2018.02.004.
PMID: 29499153
Authors: Gontier G, Iyer M, Shea JM, Bieri G, Wheatley EG, Ramalho-Santos M, Villeda SA.
Reference: Cell Rep. 2018 Feb 20;22(8):1974-1981. doi: 10.1016/j.celrep.2018.02.001.
PMID: 29466726
2017
Authors: Ebata KT, Mesh K, Liu S, Bilenky M, Fekete A, Acker MG, Hirst M, Garcia BA, Ramalho-Santos M.
Reference: Epigenetics Chromatin. 2017 Jul 12;10:36. doi: 10.1186/s13072-017-0143-3. eCollection 2017.
PMID: 28706564
Authors: Shenoy TR, Boysen G, Wang MY, Xu QZ, Guo W, Koh FM, Wang C, Zhang LZ, Wang Y, Gil V, Aziz S, Christova R, Rodrigues DN, Crespo M, Rescigno P, Tunariu N, Riisnaes R, Zafeiriou Z, Flohr P, Yuan W, Knight E, Swain A, Ramalho-Santos M, Xu DY, de Bono J, Wu H.
Reference: Ann Oncol. 2017 Jul 1;28(7):1495-1507. doi: 10.1093/annonc/mdx165.
PMID: 28383660
Authors: Percharde M, Wong P, Ramalho-Santos M.
Reference: Cell Rep. 2017 Jun 6;19(10):1987-1996. doi: 10.1016/j.celrep.2017.05.036.
PMID: 28591571
Authors: Percharde M, Bulut-Karslioglu A, Ramalho-Santos M.
Reference: Dev Cell. 2017 Jan 9;40(1):9-21. doi: 10.1016/j.devcel.2016.11.010. Epub 2016 Dec 15. Review.
PMID: 27989554
2016
Authors: Bulut-Karslioglu A, Biechele S, Jin H, Macrae TA, Hejna M, Gertsenstein M, Song JS, Ramalho-Santos M.
Reference: Nature. 2016 Dec 1;540(7631):119-123. doi: 10.1038/nature20578. Epub 2016 Nov 23.
PMID: 27880763
Authors: Qin H, Hejna M, Liu Y, Percharde M, Wossidlo M, Blouin L, Durruthy-Durruthy J, Wong P, Qi Z, Yu J, Qi LS, Sebastiano V, Song JS, Ramalho-Santos M.
Reference: Cell Rep. 2016 Mar 15;14(10):2301-12. doi: 10.1016/j.celrep.2016.02.036. Epub 2016 Mar 3.
PMID: 26947063
2015
Authors: Biechele S, Lin CJ, Rinaudo PF, Ramalho-Santos M.
Reference: Curr Opin Genet Dev. 2015 Oct;34:17-23. doi: 10.1016/j.gde.2015.06.003. Epub 2015 Jul 13. Review.
PMID: 26183187
Authors: Koh FM, Lizama CO, Wong P, Hawkins JS, Zovein AC, Ramalho-Santos M.
Reference: Proc Natl Acad Sci U S A. 2015 Apr 7;112(14):E1734-43. doi: 10.1073/pnas.1424850112. Epub 2015 Mar 23.
PMID: 25831528
Authors: Diaz AA, Qin H, Ramalho-Santos M, Song JS.
Reference: Nucleic Acids Res. 2015 Feb 18;43(3):e16. doi: 10.1093/nar/gku1197. Epub 2014 Nov 26.
PMID: 25428347
Authors: Guzman-Ayala M, Sachs M, Koh FM, Onodera C, Bulut-Karslioglu A, Lin CJ, Wong P, Nitta R, Song JS, Ramalho-Santos M.
Reference: Development. 2015 Jan 1;142(1):118-27. doi: 10.1242/dev.114843. Epub 2014 Dec 5.
PMID: 25480920
2014
Authors: Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, Rynes E, Kirilusha A, Marinov GK, Williams BA, Trout D, Amrhein H, Fisher-Aylor K, Antoshechkin I, DeSalvo G, See LH, Fastuca M, Drenkow J, Zaleski C, Dobin A, Prieto P, Lagarde J, Bussotti G, Tanzer A, Denas O, Li K, Bender MA, Zhang M, Byron R, Groudine MT, McCleary D, Pham L, Ye Z, Kuan S, Edsall L, Wu YC, Rasmussen MD, Bansal MS, Kellis M, Keller CA, Morrissey CS, Mishra T, Jain D, Dogan N, Harris RS, Cayting P, Kawli T, Boyle AP, Euskirchen G, Kundaje A, Lin S, Lin Y, Jansen C, Malladi VS, Cline MS, Erickson DT, Kirkup VM, Learned K, Sloan CA, Rosenbloom KR, Lacerda de Sousa B, Beal K, Pignatelli M, Flicek P, Lian J, Kahveci T, Lee D, Kent WJ, Ramalho Santos M, Herrero J, Notredame C, Johnson A, Vong S, Lee K, Bates D, Neri F, Diegel M, Canfield T, Sabo PJ, Wilken MS, Reh TA, Giste E, Shafer A, Kutyavin T, Haugen E, Dunn D, Reynolds AP, Neph S, Humbert R, Hansen RS, De Bruijn M, Selleri L, Rudensky A, Josefowicz S, Samstein R, Eichler EE, Orkin SH, Levasseur D, Papayannopoulou T, Chang KH, Skoultchi A, Gosh S, Disteche C, Treuting P, Wang Y, Weiss MJ, Blobel GA, Cao X, Zhong S, Wang T, Good PJ, Lowdon RF, Adams LB, Zhou XQ, Pazin MJ, Feingold EA, Wold B, Taylor J, Mortazavi A, Weissman SM, Stamatoyannopoulos JA, Snyder MP, Guigo R, Gingeras TR, Gilbert DM, Hardison RC, Beer MA, Ren B; Mouse ENCODE Consortium.
Reference: Nature. 2014 Nov 20;515(7527):355-64. doi: 10.1038/nature13992.
PMID: 25409824
Authors: Lin CJ, Koh FM, Wong P, Conti M, Ramalho-Santos M.
Reference: Dev Cell. 2014 Aug 11;30(3):268-79. doi: 10.1016/j.devcel.2014.06.022. Epub 2014 Jul 31.
PMID: 25087892
Authors: Qin H, Diaz A, Blouin L, Lebbink RJ, Patena W, Tanbun P, LeProust EM, McManus MT, Song JS, Ramalho-Santos M.
Reference: Cell. 2014 Jul 17;158(2):449-461. doi: 10.1016/j.cell.2014.05.040.
PMID: 25036638
2013
Authors: Chen J, Torcia S, Xie F, Lin CJ, Cakmak H, Franciosi F, Horner K, Onodera C, Song JS, Cedars MI, Ramalho-Santos M, Conti M.
Reference: Nat Cell Biol. 2013 Dec;15(12):1415-23. doi: 10.1038/ncb2873. Epub 2013 Nov 24.
PMID: 24270888
Authors: Lin CJ, Conti M, Ramalho-Santos M.
Reference: Development. 2013 Sep;140(17):3624-34. doi: 10.1242/dev.095513. Epub 2013 Jul 31.
PMID: 23903189
Authors: Blaschke K, Ebata KT, Karimi MM, Zepeda-Martínez JA, Goyal P, Mahapatra S, Tam A, Laird DJ, Hirst M, Rao A, Lorincz MC, Ramalho-Santos M.
Reference: Nature. 2013 Aug 8;500(7461):222-6. doi: 10.1038/nature12362. Epub 2013 Jun 30.
PMID: 23812591
Authors: Sachs M, Onodera C, Blaschke K, Ebata KT, Song JS, Ramalho-Santos M.
Reference: Cell Rep. 2013 Jun 27;3(6):1777-84. doi: 10.1016/j.celrep.2013.04.032. Epub 2013 May 30.
PMID: 23727241
Authors: Sakaki-Yumoto M, Liu J, Ramalho-Santos M, Yoshida N, Derynck R.
Reference: J Biol Chem. 2013 Jun 21;288(25):18546-60. doi: 10.1074/jbc.M112.446591. Epub 2013 May 6.
PMID: 23649632
2012
Authors: Qin H, Blaschke K, Wei G, Ohi Y, Blouin L, Qi Z, Yu J, Yeh RF, Hebrok M, Ramalho-Santos M.
Reference: Hum Mol Genet. 2012 May 1;21(9):2054-67. doi: 10.1093/hmg/dds023. Epub 2012 Jan 27.
PMID: 22286172
Authors: Hunkapiller J, Shen Y, Diaz A, Cagney G, McCleary D, Ramalho-Santos M, Krogan N, Ren B, Song JS, Reiter JF.
Reference: PLoS Genet. 2012;8(3):e1002576. doi: 10.1371/journal.pgen.1002576. Epub 2012 Mar 15.
PMID: 22438827
2011
Authors: Ohi Y, Qin H, Hong C, Blouin L, Polo JM, Guo T, Qi Z, Downey SL, Manos PD, Rossi DJ, Yu J, Hebrok M, Hochedlinger K, Costello JF, Song JS, Ramalho-Santos M.
Reference: Nat Cell Biol. 2011 May;13(5):541-9. doi: 10.1038/ncb2239. Epub 2011 Apr 17.
PMID: 21499256
Authors: Gaspar-Maia A, Alajem A, Meshorer E, Ramalho-Santos M.
Reference: Nat Rev Mol Cell Biol. 2011 Jan;12(1):36-47. doi: 10.1038/nrm3036. Review. Erratum in: Nat Rev Mol Cell Biol. 2011 Apr;12(4):273.
PMID: 21179060
2010
Authors: Koh FM, Sachs M, Guzman-Ayala M, Ramalho-Santos M.
Reference: Curr Opin Genet Dev. 2010 Oct;20(5):492-9. doi: 10.1016/j.gde.2010.06.002. Epub 2010 Jul 2. Review.
PMID: 20598875
2009
Authors: Ramalho-Santos M.
Reference: Cell. 2009 Aug 21;138(4):616-8. doi: 10.1016/j.cell.2009.08.012.
PMID: 19703387
Authors: Gaspar-Maia A, Alajem A, Polesso F, Sridharan R, Mason MJ, Heidersbach A, Ramalho-Santos J, McManus MT, Plath K, Meshorer E, Ramalho-Santos M.
Reference: Nature. 2009 Aug 13;460(7257):863-8. doi: 10.1038/nature08212. Epub 2009 Jul 8.
PMID: 19587682
2008
Authors: Chaivorapol C, Melton C, Wei G, Yeh RF, Ramalho-Santos M, Blelloch R, Li H.
Reference: BMC Bioinformatics. 2008 Oct 27;9:455. doi: 10.1186/1471-2105-9-455.
PMID: 18950538
Authros: Grskovic M, Ramalho-Santos M.
Reference: StemBook [Internet]. Cambridge (MA): Harvard Stem Cell Institute; 2008-. 2008 Oct 10.
PMID: 20614622
Authors: Wong CC, Gaspar-Maia A, Ramalho-Santos M, Reijo Pera RA.
Reference: PLoS One. 2008 Apr 16;3(4):e1955. doi: 10.1371/journal.pone.0001955.
PMID: 18414659
2007
Authors: Blelloch R, Venere M, Yen J, Ramalho-Santos M.
Reference: Cell Stem Cell. 2007 Sep 13;1(3):245-7. doi: 10.1016/j.stem.2007.08.008. Epub 2007 Sep 6. No abstract available.
PMID: 18371358
Authors: Grskovic M, Chaivorapol C, Gaspar-Maia A, Li H, Ramalho-Santos M.
Reference: PLoS Genet. 2007 Aug;3(8):e145.
PMID: 17784790
Authors: Ramalho-Santos M, Willenbring H.
Reference: Cell Stem Cell. 2007 Jun 7;1(1):35-8. doi: 10.1016/j.stem.2007.05.013.
PMID: 18371332
2006
Authors: Heidersbach A, Gaspar-Maia A, McManus MT, Ramalho-Santos M.
Reference: Gene Ther. 2006 Mar;13(6):478-86. Review.
PMID: 16520820
2004
2002
Authors: Ramalho-Santos M, Yoon S, Matsuzaki Y, Mulligan RC, Melton DA.
Reference: Science. 2002 Oct 18;298(5593):597-600. Epub 2002 Sep 12.
PMID: 12228720
2001
Authors: Zhang XM, Ramalho-Santos M, McMahon AP.
Reference: Cell. 2001 Jul 27;106(2):781-92.
PMID: 11517919
2000
Authors: Ramalho-Santos M, Melton DA, McMahon AP.
Reference: Development. 2000 Jun;127(12):2763-72.
PMID: 10821773
Authors: Haggarty SJ, Ramalho-Santos M.
Reference: Nature. 2000 Feb 10;403(6770):591. No abstract available.
PMID: 10688171
1999
Authors: Faro C, Ramalho-Santos M, Vieira M, Mendes A, Simões I, Andrade R, Veríssimo P, Lin X, Tang J, Pires E.
Reference: J Biol Chem. 1999 Oct 1;274(40):28724-9.
PMID: 10497243
1998
Authors: Ramalho-Santos M, Veríssimo P, Cortes L, Samyn B, Van Beeumen J, Pires E, Faro C.
Reference: Eur J Biochem. 1998 Jul 1;255(1):133-8.
PMID: 9692911
Authors: Ramalho-Santos M, Pissarra J, Pires E, Faro C.
Reference: Adv Exp Med Biol. 1998;436:253-8. No abstract available.
PMID: 9561227
Authors: Veríssimo P, Ramalho-Santos M, Faro C, Pires E.
Referece: Adv Exp Med Biol. 1998;436:459-63. Review. No abstract available.
PMID: 9561253
Authors: Faro C, Ramalho-Santos M, Veríssimo P, Pissarra J, Frazão C, Costa J, Lin XL, Tang J, Pires E.
Reference: Adv Exp Med Biol. 1998;436:423-33. Review. No abstract available.
PMID: 9580379
1997
Authors: Ramalho-Santos M, Pissarra J, Veríssimo P, Pereira S, Salema R, Pires E, Faro CJ.
Reference: Planta. 1997 Oct;203(2):204-12.
PMID: 9362566
1996
Authors: Ramalho-Santos M, Veríssimo P, Faro C, Pires E.
Reference: Biochim Biophys Acta. 1996 Sep 13;1297(1):83-9.
PMID: 8841384